Rather than explain it, I've demonstrated the problem on video (~3min):
https://www.youtube.com/watch?v=pUmGFiAZA0s
The TL;DR is when your desktop resolution > recording resolution you lose a lot of common Windows functionality and have to manually pixel align windows inside of recording tool constraints. I'm sure there's Windows APIs and methods to restrict windows operations to a customized rectangle, and that's the app you could potentially build.